interactome_stelzl: Stelzl human interactome (2005)
A network of human proteins and their binding interactions. Nodes represent proteins and an edge represents an interaction between two proteins, as inferred via high-throughput Y2H experiments using bait and prey methodology.
This network has 1706 nodes and 6207 edges.
Tags: Biological, Protein interactions, Unweighted
I may have mentioned before, but it really annoys me that www.cisco.com is not available for browsing via Tor.
Of all the Internet orgs in the world, Cisco does this.
Note: via use of Akamai's edgesuite, but not everyone enables this capability.
I propose an annual Internet Infrastructure and Access Razzie Awards and this would be my first nomination. Might need a catchier title and domain name, but this seems overdue.
interactome_yeast: Coulomb yeast interactome (2005)
A network of protein-protein binding interactions among yeast proteins. Nodes represent proteins found in yeast (Saccharomyces cerevisiae) and an edge represents a binding interaction between two proteins.
This network has 1870 nodes and 2277 edges.
Tags: Biological, Protein interactions, Unweighted
interactome_yeast: Coulomb yeast interactome (2005)
A network of protein-protein binding interactions among yeast proteins. Nodes represent proteins found in yeast (Saccharomyces cerevisiae) and an edge represents a binding interaction between two proteins.
This network has 1870 nodes and 2277 edges.
Tags: Biological, Protein interactions, Unweighted
interactome_figeys: Figeys human interactome (2007)
A network of human proteins and their binding interactions. Nodes represent proteins and an edge represents an interaction between two proteins, as inferred using a mass spectrometry‐based approach.
This network has 2239 nodes and 6452 edges.
Tags: Biological, Protein interactions, Unweighted
mist: MIST protein interaction database (2020)
The Molecular Interaction Search Tool (MIST) is a comprehensive resource of molecular interactions, assembled from severla primary sources. MIST currently supports several species, including:.
This network has 35355 nodes and 958936 edges.
Tags: Biological, Protein interactions, Unweighted
genetic_multiplex: Multiplex genetic interactions (2014)
Multiplex networks representing different types of genetic interactions, for different organisms. Layers represent (i) physical, (ii) association, (iii) co-localization, (iv) direct, and (v) suppressive, (vi) additive or synthetic genetic interaction. Edge direction (i,j) indicates gene i interacting with gene j.
This network has 144 nodes and 144 edges.
Tags: Biological, Gene regulation, Protein interactions, Unweigh…
reactome: Joshi-Tope human protein interactome (2005)
A network of human proteins and their binding interactions, extracted from Reactome project. Nodes represent proteins and an edge represents a binding interaction between two proteins.
This network has 6327 nodes and 147547 edges.
Tags: Biological, Protein interactions, Unweighted
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nematode_mammal: Global nematode–mammal interactions (2018)
A global interaction web of interactions between nematodes and their host mammal species, extracted from the helminthR package and dataset. Nodes are annotated with species-level information.
This network has 30516 nodes and 146683 edges.
Tags: Biological, Food web, Unweighted, Metadata
nematode_mammal: Global nematode–mammal interactions (2018)
A global interaction web of interactions between nematodes and their host mammal species, extracted from the helminthR package and dataset. Nodes are annotated with species-level information.
This network has 30516 nodes and 146683 edges.
Tags: Biological, Food web, Unweighted, Metadata