tree-of-life: Protein interactomes across the tree of life (2019)
Protein-protein iteraction networks ("interactome") for 1,840 species. An interactome captures all physical protein-protein interactions within one species, from direct biophysical protein-protein interactions to regulatory protein-DNA and metabolic interactions. .
This network has 464 nodes and 1321 edges.
Tags: Biological, Protein interactions
I wrote a book review of "Geopolitics at the Internet’s Core" by Fiona Alexander, Laura DeNardis, Ph.D., Nanette Levinson, and Francesca Musiani. It initially seems to be a dense technical history of Internet Protocol—that constellation of technical specifications and social agreements that makes the internet work. But this would be a profound misreading.
What Alexander, DeNardis, Levinson, and Musiani have actually written is something far more elegiac: a cenotaph for a bygo…
Freedom House's Freedom on the Net 2025 report: for the 15th straight year, global internet freedom is in decline; of the 72 countries surveyed, Kenya fell most (Tech Policy Press)
https://www.techpolicy.press/global-internet-freedom-declines-for-…
Trump defends Tucker Carlson after his podcast interview with white nationalist Nick Fuentes, saying Carlson has the freedom to choose his interviewees (Avery Lotz/Axios)
https://www.axios.com/2025/11/17/trump-tucker-carlson-nick-fuentes-interview
Zum Abend noch einige der heute besonders häufig geteilten #News:
Warum Kinderfotos nicht ins Internet gehören
https://www.
interactome_pdz: PDZ-domain interactome (2005)
A network of PDZ-domain-mediated protein–protein binding interactions, extracted from the PDZBase database. Nodes represent proteins and an edge represents a binding interaction between two proteins.
This network has 212 nodes and 244 edges.
Tags: Biological, Protein interactions, Unweighted
Q&A with Rivian founder and CEO RJ Scaringe on founding Rivian in 2009, production challenges, the VW partnership, autonomy, AI, EVs, chips, CarPlay, and more (Ben Thompson/Stratechery)
https://stratechery.com/2025/an-interv
interactome_stelzl: Stelzl human interactome (2005)
A network of human proteins and their binding interactions. Nodes represent proteins and an edge represents an interaction between two proteins, as inferred via high-throughput Y2H experiments using bait and prey methodology.
This network has 1706 nodes and 6207 edges.
Tags: Biological, Protein interactions, Unweighted
interactome_vidal: Vidal human interactome (2005)
A network of human proteins and their binding interactions. Nodes represent proteins and an edge represents a binding interaction between two proteins, as tested using a high-throughput yeast two-hybrid (Y2H) system.
This network has 3133 nodes and 6726 edges.
Tags: Biological, Protein interactions, Unweighted
dom: Animal dominance archive (2022)
Animal dominance interaction data published over a century of research. The archive contains 434 agonistic interaction datasets, totaling over 241,000 interactions. A directed edge (i,j) corresponds to an antagonist interaction between i (winner) and j (loser). If a 'weight' edge property map exists, it counts the number of such interactions.
This network has 17 nodes and 146 edges.
Tags: Social, Animal, Weighted