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Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks
David Kou\v{r}il, Trevor Manz, Tereza Clarence, Nils Gehlenborg
https://arxiv.org/abs/2509.13290 …

Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks
Summary: Uchimata is a toolkit for visualization of 3D structures of genomes. It consists of two packages: a Javascript library facilitating the rendering of 3D models of genomes, and a Python widget for visualization in Jupyter Notebooks. Main features include an expressive way to specify visual encodings, and filtering of 3D genome structures based on genomic semantics and spatial aspects. Uchimata is designed to be highly integratable with biological tooling available in Python. Availability…