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@gringene@genomic.social
2024-03-21 21:25:53

#StandardsProliferation

xkcd cartoon: how standards proliferate Situation: There are 14 competing standards. Cueball: 14?! Ridiculous! We need to develop one universal standard that covers everyone's use cases. Ponytail: Yeah! Soon: Situation: There are 15 competing standards.

Harmonise output format to that of Salmon · Issue #13 · COMBINE-lab/oarfish
Oarfish produces three files as output: .meta_info.json - metadata / mapping summary .quant - tab-separated gene / transcript counts [tname, len, num_reads] .infreps.pq - bootstrap replicates file ...