Tootfinder

EvoGit: Decentralized Code Evolution via Git-Based Multi-Agent Collaboration
Beichen Huang, Ran Cheng, Kay Chen Tan
https://arxiv.org/abs/2506.02049 https:…

EvoGit: Decentralized Code Evolution via Git-Based Multi-Agent Collaboration
We introduce EvoGit, a decentralized multi-agent framework for collaborative software development driven by autonomous code evolution. EvoGit deploys a population of independent coding agents, each proposing edits to a shared codebase without centralized coordination, explicit message passing, or shared memory. Instead, all coordination emerges through a Git-based phylogenetic graph that tracks the full version lineage and enables agents to asynchronously read from and write to the evolving cod…

Computing phylogenetic invariants for time-reversible models: from TN93 to its submodels
Marta Casanellas, Jennifer Garbett, Roser Homs, Annachiara Korchmaros, Niharika Chakrabarty Paul
https://arxiv.org/abs/2505.20526

Computing phylogenetic invariants for time-reversible models: from TN93 to its submodels
Phylogenetic invariants are equations that vanish on algebraic varieties associated with Markov processes that model molecular substitutions on phylogenetic trees. For practical applications, it is essential to understand these equations across a wide range of substitution models. Recent work has shown that, for equivariant models, phylogenetic invariants can be derived from those of the general Markov model by restricting to the linear space defined by the model (namely, the space of mixtures …

This https://arxiv.org/abs/2408.03431 has been replaced.
initial toot: https://mastoxiv.page/@arXiv_mat…

Compactifications of phylogenetic systems and species of electrical networks
We describe new spaces and maps. Our graphical map is a visual and numerical correspondence between spaces of circular electrical networks and circular planar split systems. When restricted to the planar circular electrical case, this graphical map finds the split system uniquely associated with the Kalmanson resistance distance of the dual network, matching the induced split system familiar from phylogenetics. This correspondence is extended to compactifications of the respective spaces, takin…

This https://arxiv.org/abs/1206.3472 has been replaced.
link: https://scholar.google.com/scholar?q=a

Perfect taxon sampling and fixing taxon traceability: Introducing a class of phylogenetically decisive collections of taxon sets
Phylogenetically decisive collections of taxon sets have the property that if trees are chosen for each of their elements, as long as these trees are compatible, the resulting supertree is unique. This means that as long as the trees describing the phylogenetic relationships of the (input) species sets are compatible, they can only be combined into a common supertree in precisely one way. This setting is sometimes also referred to as \enquote{perfect taxon sampling}. While for rooted trees, the…

This https://arxiv.org/abs/1206.3472 has been replaced.
link: https://scholar.google.com/scholar?q=a

Perfect taxon sampling and fixing taxon traceability: Introducing a class of phylogenetically decisive collections of taxon sets
Phylogenetically decisive collections of taxon sets have the property that if trees are chosen for each of their elements, as long as these trees are compatible, the resulting supertree is unique. This means that as long as the trees describing the phylogenetic relationships of the (input) species sets are compatible, they can only be combined into a common supertree in precisely one way. This setting is sometimes also referred to as \enquote{perfect taxon sampling}. While for rooted trees, the…