Tootfinder

Scalable and Cost-Efficient de Novo Template-Based Molecular Generation
Piotr Gai\'nski, Oussama Boussif, Andrei Rekesh, Dmytro Shevchuk, Ali Parviz, Mike Tyers, Robert A. Batey, Micha{\l} Koziarski
https://arxiv.org/abs/2506.19865

Scalable and Cost-Efficient de Novo Template-Based Molecular Generation
Template-based molecular generation offers a promising avenue for drug design by ensuring generated compounds are synthetically accessible through predefined reaction templates and building blocks. In this work, we tackle three core challenges in template-based GFlowNets: (1) minimizing synthesis cost, (2) scaling to large building block libraries, and (3) effectively utilizing small fragment sets. We propose \textbf{Recursive Cost Guidance}, a backward policy framework that employs auxiliary m…

Time-frequency Imprints of Extreme Mass-Ratio Inspirals in Confusion Gravitational Wave Background
Lingyuan Ji, Liang Dai
https://arxiv.org/abs/2506.17380 …

Time-frequency Imprints of Extreme Mass-Ratio Inspirals in Confusion Gravitational Wave Background
Detecting individual extreme-mass-ratio inspirals (EMRIs) is a major science goal of future space-based gravitational wave observatories such as Laser Interferometer Space Antenna (LISA) and TianQin. However, matched-filtering can be challenging as waveform templates are required to be accurate over tens of thousands of orbits. We introduce the time-frequency spectrum as an alternative observable that can be exploited to reveal the chirping of EMRIs at the population level. We analytically calc…

Full-spectrum modeling of mobile gamma-ray spectrometry systems in scattering media
David Breitenmoser, Alberto Stabilini, Sabine Mayer
https://arxiv.org/abs/2506.17820

Full-spectrum modeling of mobile gamma-ray spectrometry systems in scattering media
Mobile gamma-ray spectrometry (MGRS) systems are essential for localizing, identifying, and quantifying gamma-ray sources in complex environments. Full-spectrum template matching offers the highest accuracy and sensitivity for these tasks but is limited by the computational cost of generating the required spectral templates. Here, we present a generalized full-spectrum modeling framework for MGRS systems in scattering media, enabling near real-time template generation through dynamic, anisotrop…

Cosmic-ray and Interstellar Gas Properties in the Solar Neighborhood Revealed by Diffuse Gamma Rays
Tsunefumi Mizuno, Katsuhiro Hayashi, Hinako Ochi, Igor V. Moskalenko, Elena Orlando, Andrew W. Strong
https://arxiv.org/abs/2506.16252

Cosmic-ray and Interstellar Gas Properties in the Solar Neighborhood Revealed by Diffuse Gamma Rays
To investigate the interstellar medium (ISM) and Galactic cosmic rays (CRs) in the solar neighborhood, we analyzed $γ$-ray data by Fermi Large Area Telescope (LAT) for five nearby molecular cloud regions. Our data includes the MBM/Pegasus region (MBM~53, 54, 55 clouds and Pegasus loop), R CrA region (R Coronae Australis clouds), Chamaeleon region (Chamaeleon clouds), Cep/Pol region (Cepheus and Polaris flare), and Orion region (Orion clouds). The ISM templates are constructed by a component de…

Bidirectional Biometric Authentication Using Transciphering and (T)FHE
Joon Soo Yoo, Tae Min Ahn, Ji Won Yoon
https://arxiv.org/abs/2506.12802 https://

Bidirectional Biometric Authentication Using Transciphering and (T)FHE
Biometric authentication systems pose privacy risks, as leaked templates such as iris or fingerprints can lead to security breaches. Fully Homomorphic Encryption (FHE) enables secure encrypted evaluation, but its deployment is hindered by large ciphertexts, high key overhead, and limited trust models. We propose the Bidirectional Transciphering Framework (BTF), combining FHE, transciphering, and a non-colluding trusted party to enable efficient and privacy-preserving biometric authentication. T…

Today I started implementing a new Mail Renderer / Sender, based on a setup we already use, but instead of using hardcoded templates it generates the mail templates based on Widgets that users can click together in a web frontend. Complex and fun.

New release: FlowIntel 1.6.0 — an open-source case management tool — now with extended support for importing MISP events as cases, a timeline view for attributes, a new templating system for notes, and many other new features!
🔗 https://github.com/flowintel/flowintel/releases/tag/1…

Release Flowintel release version 1.6.0 with new features, modifications on analyzer and dashboard · flowintel/flowintel
This release introduces several new features, including: Templates for notes that can be reused across cases Importing a Flowintel template into a case Creating a case from a MISP event A timeline...

from my link log —
Exploring Typst, a new typesetting system similar to LaTeX.
https://blog.jreyesr.com/posts/typst/
saved 2024-10-12 https://

Unsupervised Document and Template Clustering using Multimodal Embeddings
Phillipe R. Sampaio, Helene Maxcici
https://arxiv.org/abs/2506.12116 https://

Unsupervised Document and Template Clustering using Multimodal Embeddings
This paper investigates a novel approach to unsupervised document clustering by leveraging multimodal embeddings as input to traditional clustering algorithms such as $k$-Means and DBSCAN. Our method aims to achieve a finer-grained document understanding by not only grouping documents at the type level (e.g., invoices, purchase orders), but also distinguishing between different templates within the same document category. This is achieved by using embeddings that capture textual content, layout…

I think the Swedish Transport Administration, Trafikverket, is using templates wrong or something. Not sure what the Situation is :P

"[…] Let's take a look at 6 improvements to look forward to in the upcoming #GCC 15.
1. Prettier execution paths
2. A new look for C template errors
3. Machine-readable diagnostics
4. An easier transition to C23
5. A revamped color scheme
6. libgdiagnostics
We're still fixing bugs, but we hope that GCC 15 will be ready to officially release (as …

6 usability improvements in GCC 15 | Red Hat Developer
GCC 15 brings better error messages and diagnostics for your code, including prettier execution paths and easier-to-read compiler errors for C++ templates

Bidirectional Biometric Authentication Using Transciphering and (T)FHE
Joon Soo Yoo, Tae Min Ahn, Ji Won Yoon
https://arxiv.org/abs/2506.12802 https://

Bidirectional Biometric Authentication Using Transciphering and (T)FHE
Biometric authentication systems pose privacy risks, as leaked templates such as iris or fingerprints can lead to security breaches. Fully Homomorphic Encryption (FHE) enables secure encrypted evaluation, but its deployment is hindered by large ciphertexts, high key overhead, and limited trust models. We propose the Bidirectional Transciphering Framework (BTF), combining FHE, transciphering, and a non-colluding trusted party to enable efficient and privacy-preserving biometric authentication. T…

CLUES III: Do User Choices Impact The Results of SED Fitting? Tests of 'Off-The-Shelf' Stellar Population and Dust Extinction Models in the CLUES Sample
Andrew Mizener, Daniela Calzetti, Angela Adamo, Aida Wofford, Matthew J. Hayes, John Chisholm, Michele Fumagalli, Svea Hernandez, Matteo Maria Messa, Linda J. Smith, Arjan Bik, Kathryn Grasha, Mattia Sirressi

CLUES III: Do User Choices Impact The Results of SED Fitting? Tests of 'Off-The-Shelf' Stellar Population and Dust Extinction Models in the CLUES Sample
The simple stellar population models produced by stellar population and spectral synthesis (SPS) codes are used as spectral templates in a variety of astrophysical contexts. In this paper, we test the predictions of four commonly used stellar population synthesis codes (YGGDRASIL, BPASS, FSPS, and a modified form of GALAXEV which we call GALAXEVneb) by using them as spectral templates for photometric SED fitting with a sample of 18 young stellar clusters. All clusters have existing HST COS FUV …

Deployability-Centric Infrastructure-as-Code Generation: An LLM-based Iterative Framework
Tianyi Zhang, Shidong Pan, Zejun Zhang, Zhenchang Xing, Xiaoyu Sun
https://arxiv.org/abs/2506.05623

Deployability-Centric Infrastructure-as-Code Generation: An LLM-based Iterative Framework
Infrastructure-as-Code (IaC) generation holds significant promise for automating cloud infrastructure provisioning. Recent advances in Large Language Models (LLMs) present a promising opportunity to democratize IaC development by generating deployable infrastructure templates from natural language descriptions, but current evaluation focuses on syntactic correctness while ignoring deployability, the fatal measure of IaC template utility. We address this gap through two contributions: (1) IaCGen…

This https://arxiv.org/abs/2504.05307 has been replaced.
initial toot: https://mastoxiv.page/@arXiv_csIR_…

Toward Total Recall: Enhancing FAIRness through AI-Driven Metadata Standardization
Scientific metadata often suffer from incompleteness, inconsistency, and formatting errors, which hinder effective discovery and reuse of the associated datasets. We present a method that combines GPT-4 with structured metadata templates from the CEDAR knowledge base to automatically standardize metadata and to ensure compliance with established standards. A CEDAR template specifies the expected fields of a metadata submission and their permissible values. Our standardization process involves u…

from my link log —
The ATS programming language: unleashing the potential of types and templates!
https://www.cs.bu.edu/~hwxi/atslangweb/
saved 2024-11-02

Rock-salt ScN(113) layers grown on AlN$(11\bar{2}2)$ by plasma-assisted molecular beam epitaxy
Duc V. Dinh, Esperanza Luna, Oliver Brandt
https://arxiv.org/abs/2506.09715

Rock-salt ScN(113) layers grown on AlN$(11\bar{2}2)$ by plasma-assisted molecular beam epitaxy
Transition-metal nitrides constitute a versatile class of materials with diverse properties and wide-ranging applications. Exploring new surface orientations and uncovering novel properties can enable innovative material configurations with tailored functionalities for device integration. Here, we report the growth and characterization of (85-210)-nm-thick undoped ScN layers on AlN$(11\bar{2}2)$/Al$_{2}$O$_{3}$$(10\bar{1}0)$ templates via plasma-assisted molecular beam epitaxy. X-ray diffractom…

ASP Chef grows Mustache to look better
Mario Alviano, Wolfgang Faber, Luis Angel Rodriguez Reiners
https://arxiv.org/abs/2505.24537 https://

ASP Chef grows Mustache to look better
We present ASP Chef Mustache, an extension of ASP Chef that enhances template-based rendering of ASP solutions using a logic-less templating system inspired by Mustache. Our approach integrates data visualization frameworks such as Tabulator, Chart.js, and vis.js, enabling interactive representations of ASP interpretations as tables, charts, and graphs. Mustache queries in templates support advanced constructs for formatting, sorting, and multi-stage expansion, facilitating the generation of ri…

I've just upgraded my self-hosted #Listmonk instance to 5.0.0, and I absolutely LOVE the new visual email template builder powered by EmailBuilder.js!
I can't wait to start creating new templates for the candide ꘎ media newsletter ✨
More on the software: …

This https://arxiv.org/abs/2210.07383 has been replaced.
link: https://scholar.google.com/scholar?q=a

Notes on CSPs and Polymorphisms
These are notes from a multi-year learning seminar on the algebraic approach to Constraint Satisfaction Problems (CSPs). The main topics covered are the theory of algebraic structures with few subpowers, the theory of absorbing subalgebras and its applications to studying CSP templates which can be solved by local consistency methods, and the dichotomy theorem for conservative CSP templates. Subsections and appendices cover supplementary material.

The Exact and Approximate Tales of Boost-Breaking Cosmological Correlators
Zhehan Qin, S\'ebastien Renaux-Petel, Xi Tong, Denis Werth, Yuhang Zhu
https://arxiv.org/abs/2506.01555

The Exact and Approximate Tales of Boost-Breaking Cosmological Correlators
Cosmological correlators offer a remarkable window into the high-energy physics governing Universe's earliest moments, with the tantalising prospect of discovering new particles. However, extracting new physics from these observables requires both precise theoretical predictions of inflationary theories and accurate, analytical templates suitable for data analysis throughout parameter and kinematic spaces. In this paper, we extend the current analytical results by computing the most general boo…

Strained 2D TMD lateral heterojunctions via grayscale thermal-Scanning Probe Lithography
G. Zambito (Dipartimento di Fisica, Universit\`a di Genova, Genova, Italy), G. Ferrando (Dipartimento di Fisica, Universit\`a di Genova, Genova, Italy), M. Barelli (Dipartimento di Fisica, Universit\`a di Genova, Genova, Italy), M. Ceccardi (Dipartimento di Fisica, Universit\`a di Genova, Genova, Italy), F. Caglieris (CNR-SPIN, Genova, Italy), D. Marre (Dipartimento di Fisica, Universit\`a di Genov…

Strained 2D TMD lateral heterojunctions via grayscale thermal-Scanning Probe Lithography
Nanoscale tailoring of the optoelectronic response of 2D Transition Metal Dichalcogenides semiconductor layers (TMDs) has been achieved thanks to a novel strain engineering approach based on the grayscale thermal-Scanning Probe Lithography (t-SPL). This method allows the maskless nanofabrication of locally strained 2D MoS2-Au lateral heterojunction nanoarrays that are characterized by asymmetric electrical behavior. 2D MoS2 layers are conformally transferred onto grayscale t-SPL templates chara…

LHAASO Protons versus LHAASO Diffuse Gamma Rays: A Consistency Check
Luis Enrique Espinosa Castro, Francesco Lorenzo Villante, Vittoria Vecchiotti, Carmelo Evoli, Giulia Pagliaroli
https://arxiv.org/abs/2506.06593

LHAASO Protons versus LHAASO Diffuse Gamma Rays: A Consistency Check
We perform the first direct consistency check between the recently measured proton spectrum at the knee by LHAASO and the collaboration's own high-precision mapping of Galactic diffuse gamma-ray emission. By modeling the hadronic gamma-ray production using the updated cosmic-ray spectra, gas templates and cross-section models, we show that the predicted gamma-ray flux robustly overshoots the LHAASO data in both inner and lateral Galactic regions. This persistent mismatch in both normalization a…

Template-Guided 3D Molecular Pose Generation via Flow Matching and Differentiable Optimization
No\'emie Bergues, Arthur Carr\'e, Paul Join-Lambert, Brice Hoffmann, Arnaud Blondel, Hamza Tajmouati
https://arxiv.org/abs/2506.06305

Template-Guided 3D Molecular Pose Generation via Flow Matching and Differentiable Optimization
Predicting the 3D conformation of small molecules within protein binding sites is a key challenge in drug design. When a crystallized reference ligand (template) is available, it provides geometric priors that can guide 3D pose prediction. We present a two-stage method for ligand conformation generation guided by such templates. In the first stage, we introduce a molecular alignment approach based on flow-matching to generate 3D coordinates for the ligand, using the template structure as a refe…

Loop Patterns Formed by Cellular Automata
Rolf Hoffmann, Mariusz Bia{\l}ecki
https://arxiv.org/abs/2505.22679 https://arxiv.org/pdf/2…

Loop Patterns Formed by Cellular Automata
A Cellular Automata (CA) rule is presented that can generate "loop patterns" in a 2D grid under fixed boundary conditions. A loop is a cyclically closed path represented by one-cells enclosed by zero-cells. A loop pattern can contain several loops that are not allowed to touch each other. The problem is solved by designing an appropriate set of tiles that can overlap and which are used in the CA rule. Templates are derived from the tiles which are used for local pattern matching. In order to dr…

This https://arxiv.org/abs/2502.18504 has been replaced.
initial toot: https://mastoxiv.page/@arXiv_csCR_…

TurboFuzzLLM: Turbocharging Mutation-based Fuzzing for Effectively Jailbreaking Large Language Models in Practice
Jailbreaking large-language models (LLMs) involves testing their robustness against adversarial prompts and evaluating their ability to withstand prompt attacks that could elicit unauthorized or malicious responses. In this paper, we present TurboFuzzLLM, a mutation-based fuzzing technique for efficiently finding a collection of effective jailbreaking templates that, when combined with harmful questions, can lead a target LLM to produce harmful responses through black-box access via user prompt…

This https://arxiv.org/abs/2502.05258 has been replaced.
initial toot: https://mastoxiv.page/@arXiv_…

Searching for Inflationary Physics with the CMB Trispectrum: 2. Code & Validation
To unlock the vast potential of the CMB trispectrum, we require both robust estimators and efficient computational tools. In this work, we introduce the public code PolySpec: a suite of quartic estimators designed to measure the amplitudes of a wide variety of inflationary templates, including local non-Gaussianity, effective field theory models, direction-dependent trispectra, spinning massive particle exchange, and weak gravitational lensing. PolySpec includes a python/cython implementation o…

Loop Patterns Formed by Cellular Automata
Rolf Hoffmann, Mariusz Bia{\l}ecki
https://arxiv.org/abs/2505.22679 https://arxiv.org/pdf/2…

Loop Patterns Formed by Cellular Automata
A Cellular Automata (CA) rule is presented that can generate "loop patterns" in a 2D grid under fixed boundary conditions. A loop is a cyclically closed path represented by one-cells enclosed by zero-cells. A loop pattern can contain several loops that are not allowed to touch each other. The problem is solved by designing an appropriate set of tiles that can overlap and which are used in the CA rule. Templates are derived from the tiles which are used for local pattern matching. In order to dr…