Tootfinder

Cowboys Countdown to Cutdown Day: Player profiles No. 90 - No. 81 as pass catcher play https://cowboyswire.usatoday.com/story/sports/nfl/cowboys/2025/06/11/cowboys-player-profiles-no-90-no-81-repository/841…

Linking Data Citation to Repository Visibility: An Empirical Study
Fakhri Momeni, Janete Saldanha Bach, Brigitte Mathiak, Peter Mutschke
https://arxiv.org/abs/2506.09530

Linking Data Citation to Repository Visibility: An Empirical Study
In today's data-driven research landscape, dataset visibility and accessibility play a crucial role in advancing scientific knowledge. At the same time, data citation is essential for maintaining academic integrity, acknowledging contributions, validating research outcomes, and fostering scientific reproducibility. As a critical link, it connects scholarly publications with the datasets that drive scientific progress. This study investigates whether repository visibility influences data citatio…

Na ein Glück war Misogynie für Wissenschaftlerinnen noch nie ein Thema. :-}
https://repository.aip.org/cartoon-irene-joliot-curie-paris-newspaper

Hooray, parallel downloading of repository metadata was merged for #dnf! 🥳
https://github.com/rpm-software-management/dnf5/issues/307#issuecomment-2…

@… @… I love this. ^_^
This is the same GitHub where any commit on any fork is accessible in the forked repository, right?
I wonder if you can brick someone else's repo by forking, without even opening a PR…

#Wasserstoff gilt als Hoffnungsträger für die #Dekarbonisierung, doch beim Transport durch bestehende #Erdgasleitungen gibt es

Pipelines for hydrogen transport: A review of integrity and safety challenges
The European Commission highlights hydrogen as an important energy carrier and chemical feedstock that could help decarbonise sectors otherwise deemed hard-to-abate. Europe’s existing natural gas grid is seen as a promising asset to repurpose for the transportation of hydrogen. This technical report provides a literature review of hydrogen's impact on pipeline materials, particularly steel and polymers. Hydrogen is known to reduce the ductility, fracture toughness, and the fatigue crack growt…

This https://arxiv.org/abs/2504.20118 has been replaced.
initial toot: https://mastoxiv.page/@arXiv_csIR_…

OpenTCM: A GraphRAG-Empowered LLM-based System for Traditional Chinese Medicine Knowledge Retrieval and Diagnosis
Traditional Chinese Medicine (TCM) represents a rich repository of ancient medical knowledge that continues to play an important role in modern healthcare. Due to the complexity and breadth of the TCM literature, the integration of AI technologies is critical for its modernization and broader accessibility. However, this integration poses considerable challenges, including the interpretation of obscure classical Chinese texts and the modeling of intricate semantic relationships among TCM concep…

Emerging applications of neurotechnology and their implications for EU governance #BCI

Emerging applications of neurotechnology and their implications for EU governance
This report sums up recent developments in neurotechnology, that is, technology that can read and modify activity from the central nervous system. Some devices record information from the brain, and others deliver stimulation to the brain (and some do both). These technologies are rapidly advancing and are likely to have a profound impact on various aspects of society. In the near future, neurotechnology is set to revolutionise the way we approach a range of policy areas, from healthcare, educa…

@… so, it I were to ask here whether your ~900 lines of Go were in a public repository anywhere, no-one would ever read it and I wouldn't get a reply?

How do Pre-Trained Models Support Software Engineering? An Empirical Study in Hugging Face
Alexandra Gonz\'alez, Xavier Franch, David Lo, Silverio Mart\'inez-Fern\'andez
https://arxiv.org/abs/2506.03013

How do Pre-Trained Models Support Software Engineering? An Empirical Study in Hugging Face
Open-Source Pre-Trained Models (PTMs) provide extensive resources for various Machine Learning (ML) tasks, yet these resources lack a classification tailored to Software Engineering (SE) needs. To address this gap, we derive a taxonomy encompassing 147 SE tasks and apply an SE-oriented classification to PTMs in a popular open-source ML repository, Hugging Face (HF). Our repository mining study began with a systematically gathered database of PTMs from the HF API, considering their model card de…

Sooo... does anyone know why the jemalloc repository has been archived? It was fairly active right until the archival.
https://github.com/jemalloc/jemalloc

Just read Plantin & Thomer's article, on the changes Figshare for Institutions introduces into the provision & organization of data-management labor in libraries. The authors worry that this commercial SaaS platform for institutional & data repositories, while fulfilling a number of library needs, will have detrimental effects. While it's a good piece of infrastructure-studies research, I question some of the analysis & conclusions.

About 9 years ago we had the first ideas for creating an event sourced content repository. It's certainly the most complex project we ever started in the Neos team.
And now it's finally done: during the Neos sprint in Vienna we released Neos 9.0!
https://www.flownative.com/en/blog/…

This https://arxiv.org/abs/2505.01892 has been replaced.
initial toot: https://mastoxiv.page/@arXiv_csLG_…

OODTE: A Differential Testing Engine for the ONNX Optimizer
With over 700 stars on GitHub and being part of the official ONNX repository, the ONNX Optimizer is the default tool for applying graph-based optimizations to ONNX models. Despite its widespread use, its ability to maintain model accuracy during optimization has not been thoroughly investigated. In this work, we present OODTE, a utility designed to automatically and comprehensively evaluate the correctness of the ONNX Optimizer. OODTE adopts a straightforward yet powerful differential testing a…

I am a repository and I want my admins to be happy working with me regardless of their gender … Please apply if you are interested in #opensource #openscience #dspace and working with Oliver…

GitHub #MCP #Exploited: Accessing private repositories via MCP
https://invariantlabs.ai/blog/mcp-gith

GitHub MCP Exploited: Accessing private repositories via MCP.
#ai

GitHub MCP Exploited: Accessing private repositories via MCP
We showcase a critical vulnerability with the official GitHub MCP server, allowing attackers to access private repository data. The vulnerability is among the first discovered by Invariant's security analyzer for detecting toxic agent flows.

@… I have a new #git repository on my laptop of a project I started today. What's the procedure for pushing it up to my #forgejo instance?

This https://arxiv.org/abs/2501.18160 has been replaced.
initial toot: https://mastoxiv.page/@arXiv_csSE_…

RepoAudit: An Autonomous LLM-Agent for Repository-Level Code Auditing
Code auditing is the process of reviewing code with the aim of identifying bugs. Large Language Models (LLMs) have demonstrated promising capabilities for this task without requiring compilation, while also supporting user-friendly customization. However, auditing a code repository with LLMs poses significant challenges: limited context windows and hallucinations can degrade the quality of bug reports, and analyzing large-scale repositories incurs substantial time and token costs, hindering eff…

Today is the 30th anniversary of the launch of the first wiki by Ward Cunningham. A page that anyone could edit. Right from the browser. It was generally seen as a bad idea. What if people did bad things?
Originally to support the software development community in creating a repository of software design patterns, wikis were later used for many other goals (even an encyclopedia!), and became part of Web 2.0, together with blogs, fora and social media.
Thank you,

A GitHub public repository that allows you to add your climate-friendly/aware software to a browsable directory, after a peer review process. Accepted software is sorted into one or more of the following categories:
1. Measurement
2. Carbon Efficiency
3. Carbon Awareness
4. Special Tools
"GitHub's Green Software Directory"

You want #tariff in your #python packages?
TARIFF is a fantastic tool that lets you impose import tariffs on Python packages. We're going to bring manufacturing BACK to your codebase by making foreign imports more EXPENSIVE!

This https://arxiv.org/abs/2505.17647 has been replaced.
initial toot: https://mastoxiv.page/@arXiv_csCE_…

4D-CTA Image and geometry dataset for kinematic analysis of abdominal aortic aneurysms
This article presents a dataset used in the article "Kinematics of Abdominal Aortic Aneurysms" [arXiv:2405.13377], published in the Journal of Biomechanics. The dataset is publicly available for download from the Zenodo data repository (https://doi.org/10.5281/zenodo.15477710). The dataset includes time-resolved 3D computed tomography angiography (4D-CTA) images of abdominal aortic aneurysm (AAA) captured throughout the cardiac cycle from ten patients diagnosed with AAA, along with ten patient-…

Signal is finally open source
In my previous posts I criticized Signal for not being on f-droid and not allowing users to compile it from source and use it which means they cannot prove the source code on github is actually what’s used to make the app. This is a standard of scrutiny that I only hold Signal to because it gained a reputation as being an app for activists. F-Droid works my compiling the public source code on the repository’s build servers. As soon as I verify this I’ll up…

@…
I do, e.g. in the context of the repository (config tree for the excellent https://github.com/faiproject/fai) where we mostly have small commits to …

This https://arxiv.org/abs/2502.13681 has been replaced.
initial toot: https://mastoxiv.page/@arXiv_csSE_…

Repo2Run: Automated Building Executable Environment for Code Repository at Scale
Scaling up executable code data is significant for improving language models' software engineering capability. The intricate nature of the process makes it labor-intensive, time-consuming and expert-knowledge-dependent to build a large number of executable code repositories, limiting the scalability of existing work based on running tests. The primary bottleneck lies in the automated building of test environments for different repositories, which is an essential yet underexplored task. To mitig…

This https://arxiv.org/abs/2505.23671 has been replaced.
initial toot: https://mastoxiv.page/@arXiv_csSE_…

GSO: Challenging Software Optimization Tasks for Evaluating SWE-Agents
Developing high-performance software is a complex task that requires specialized expertise. We introduce GSO, a benchmark for evaluating language models' capabilities in developing high-performance software. We develop an automated pipeline that generates and executes performance tests to analyze repository commit histories to identify 102 challenging optimization tasks across 10 codebases, spanning diverse domains and programming languages. An agent is provided with a codebase and performance …

This https://arxiv.org/abs/2505.12638 has been replaced.
initial toot: https://mastoxiv.page/@arXiv_qbi…

ChromFound: Towards A Universal Foundation Model for Single-Cell Chromatin Accessibility Data
The advent of single-cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) offers an innovative perspective for deciphering regulatory mechanisms by assembling a vast repository of single-cell chromatin accessibility data. While foundation models have achieved significant success in single-cell transcriptomics, there is currently no foundation model for scATAC-seq that supports zero-shot high-quality cell identification and comprehensive multi-omics analysis simultaneous…

From Knowledge to Noise: CTIM-Rover and the Pitfalls of Episodic Memory in Software Engineering Agents
Tobias Lindenbauer, Georg Groh, Hinrich Sch\"utze
https://arxiv.org/abs/2505.23422

From Knowledge to Noise: CTIM-Rover and the Pitfalls of Episodic Memory in Software Engineering Agents
We introduce CTIM-Rover, an AI agent for Software Engineering (SE) built on top of AutoCodeRover (Zhang et al., 2024) that extends agentic reasoning frameworks with an episodic memory, more specifically, a general and repository-level Cross-Task-Instance Memory (CTIM). While existing open-source SE agents mostly rely on ReAct (Yao et al., 2023b), Reflexion (Shinn et al., 2023), or Code-Act (Wang et al., 2024), all of these reasoning and planning frameworks inefficiently discard their long-term …

GSO: Challenging Software Optimization Tasks for Evaluating SWE-Agents
Manish Shetty, Naman Jain, Jinjian Liu, Vijay Kethanaboyina, Koushik Sen, Ion Stoica
https://arxiv.org/abs/2505.23671

GSO: Challenging Software Optimization Tasks for Evaluating SWE-Agents
Developing high-performance software is a complex task that requires specialized expertise. We introduce GSO, a benchmark for evaluating language models' capabilities in developing high-performance software. We develop an automated pipeline that generates and executes performance tests to analyze repository commit histories to identify 102 challenging optimization tasks across 10 codebases, spanning diverse domains and programming languages. An agent is provided with a codebase and performance …

ChromFound: Towards A Universal Foundation Model for Single-Cell Chromatin Accessibility Data
Yifeng Jiao, Yuchen Liu, Yu Zhang, Xin Guo, Yushuai Wu, Chen Jiang, Jiyang Li, Hongwei Zhang, Limei Han, Xin Gao, Yuan Qi, Yuan Cheng
https://arxiv.org/abs/2505.12638

ChromFound: Towards A Universal Foundation Model for Single-Cell Chromatin Accessibility Data
The advent of single-cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) offers an innovative perspective for deciphering regulatory mechanisms by assembling a vast repository of single-cell chromatin accessibility data. While foundation models have achieved significant success in single-cell transcriptomics, there is currently no foundation model for scATAC-seq that supports zero-shot high-quality cell identification and comprehensive multi-omics analysis simultaneous…