tree-of-life: Protein interactomes across the tree of life (2019)
Protein-protein iteraction networks ("interactome") for 1,840 species. An interactome captures all physical protein-protein interactions within one species, from direct biophysical protein-protein interactions to regulatory protein-DNA and metabolic interactions. .
This network has 975 nodes and 3928 edges.
Tags: Biological, Protein interactions
& Up & Down II 😵
又上又下 II 😵
📷 Nikon FE
🎞️ Ilford FP4 Plus 125, expired 1993
If you like my work, buy me a coffee from PayPal #filmphotography
Foggy evening, late. #Photography
Reclaimer, spare that tree!
Take not a single bit!
It used to point to me,
Now I'm protecting it.
It was the reader's CONS
That made it, paired by dot;
Now, GC, for the nonce,
Thou shalt reclaim it not.
#Photography A horse chestnut bud turning into leaves as spring arrives in #Dorset UK.
Frozen forest
(From tonight's evening walk in the local woods...)
#SilentSunday #MonochromeMonday #LandscapePhotography
tree-of-life: Protein interactomes across the tree of life (2019)
Protein-protein iteraction networks ("interactome") for 1,840 species. An interactome captures all physical protein-protein interactions within one species, from direct biophysical protein-protein interactions to regulatory protein-DNA and metabolic interactions. .
This network has 1746 nodes and 10837 edges.
Tags: Biological, Protein interactions
Tributes to the ficus marked for felling at Steiner and Waller 💚
Our neighbor across the street snowblowing in the predawn
Are you politically homeless? May I suggest: Anarcho-syndicalism! 😉
#Anarchism #Anarchy #Politics
Getting closer to the weekend
En attendant Godot II 🤡
等待戈多 II 🤡
📷 Nikon FE
🎞️ Ilford FP4 Plus 125, expired 1993
If you like my work, buy me a coffee from PayPal #filmphotography
To whom it may concern:
I will not go peacefully into the bleak and cruel MAGA future...
I will do the hard things, I will support my neighbors, I will stand up for the weak and vulnerable, I will learn new ways to live, I will persist in being ungovernable by vile, greedy monsters, rapists, pedophiles, parasites, thieves, idiots, and con-men.
I resist, with all my being, and with all the love and compassion in the Universe.
Thank you for your attention to this matter…
Cliff Harris' Path to the Hall of Fame | The Route Tree https://www.youtube.com/watch?v=dqxa6o9zr_M
A flock of parrots seems to have selected the tree in front of my house as their new shouting space
Oh #thicktrunkTuesday might be a good day for this photo that I took on a recent hike.
It's one of my usual hikes but clouds or fog always make it so special as the usual background is gone and I see the motives in a complete different way.
And believe it or not - I went this path over 10 times but I've never seen that tree the way like at that day.
As someone who's been a professional software developer for decades now, I've made the only career decision tree that matters in 2026.
"Launching the Agent Protocols Tech Tree"
https://lil.law.harvard.edu/blog/2026/02/23/agent-protocols-tech-tree/
"APTT is a visual, videogame-style tech tree of the evolving protocols supporting AI agents."
My winter sowing lettuce seedlings sprouted too early (my fault) so I've planted them at the base of the indoor avocado tree. Felt bad to throw all the seedlings into the compost. #gardenthoughts
View from my living room window at two different times this late afternoon respectively evening.
#Sunset #Sonnenuntergang #Zürich
How Darren Woodson Became Darren Woodson | The Route Tree https://www.youtube.com/watch?v=Ob8FBC8XmAs
A folk song written earlier this year to celebrate the 100th anniversary of the #Goddard launch: https://www.youtube.com/watch?v=jCEN_JjU02c - it captures the event and its legacy well (and makes reference to Goddard's famous cherry tree and the fact that the farm where it happened is now a golf course). Artist's home page: https://roncarlsonmusic.com
Approximate Cartesian Tree Matching with Substitutions
Panagiotis Charalampopoulos, Jonas Ellert, Manal Mohamed
https://arxiv.org/abs/2602.08570 https://arxiv.org/pdf/2602.08570 https://arxiv.org/html/2602.08570
arXiv:2602.08570v1 Announce Type: new
Abstract: The Cartesian tree of a sequence captures the relative order of the sequence's elements. In recent years, Cartesian tree matching has attracted considerable attention, particularly due to its applications in time series analysis. Consider a text $T$ of length $n$ and a pattern $P$ of length $m$. In the exact Cartesian tree matching problem, the task is to find all length-$m$ fragments of $T$ whose Cartesian tree coincides with the Cartesian tree $CT(P)$ of the pattern. Although the exact version of the problem can be solved in linear time [Park et al., TCS 2020], it remains rather restrictive; for example, it is not robust to outliers in the pattern.
To overcome this limitation, we consider the approximate setting, where the goal is to identify all fragments of $T$ that are close to some string whose Cartesian tree matches $CT(P)$. In this work, we quantify closeness via the widely used Hamming distance metric. For a given integer parameter $k>0$, we present an algorithm that computes all fragments of $T$ that are at Hamming distance at most $k$ from a string whose Cartesian tree matches $CT(P)$. Our algorithm runs in time $\mathcal O(n \sqrt{m} \cdot k^{2.5})$ for $k \leq m^{1/5}$ and in time $\mathcal O(nk^5)$ for $k \geq m^{1/5}$, thereby improving upon the state-of-the-art $\mathcal O(nmk)$-time algorithm of Kim and Han [TCS 2025] in the regime $k = o(m^{1/4})$.
On the way to our solution, we develop a toolbox of independent interest. First, we introduce a new notion of periodicity in Cartesian trees. Then, we lift multiple well-known combinatorial and algorithmic results for string matching and periodicity in strings to Cartesian tree matching and periodicity in Cartesian trees.
toXiv_bot_toot
St. Patrick drove snakes out of Ireland today. I mostly drove an axe into bits of tree. As a result, we will be both snake-free and warm next winter.
🐍☘ #stpatricksday
From the always interesting http://wordsmith.org:
You can sometimes count every orange on a tree but never all the trees in a single orange. -A.K. Ramanujan, poet (16 Mar 1929-1993)
Got rid of our Christmas tree
#TreeByBike
US CHILDREN II 🧒
我們這些孩童 II 🧒
📷 Zeiss IKON Super Ikonta 533/16
🎞️ Lucky SHD 400
#filmphotography #Photography #blackandwhite
Our Christmas tree didn't drink water this year. It's been pretty much dead for the past 2 weeks. Every time you get near it, needles fall off. It's been quite a mess.
Today was the day it came down. I really wasn't looking forward to having to pick needles out of everything we own between the living room and the door for the next year, so… I went Full Dexter on it. (And it actually worked.)
Dollar Tree Dictator
bot by @…
This is for tee hee, not treason: please don't torture me.
#satire #potus45
Charles Haley Shares Story on NFL Dominance | The Route Tree https://www.youtube.com/watch?v=WzjY0YTqx4I
Хочеться простого поньського, а не оце ось все
by fuyugi (#art #MLP
Usually, we hunt down a tree in the Huron Manistee National Forest but this year we had to get one from a local tree farm so it’s not as scrawny as usual but still looks pretty nice donchathink?
It’s very spring in London
@… I don't think there's any point of reference, I'm simply reminded of a very interesting mulberry tree that an old friend and I once discovered close to a similar wall.
We had never seen a mulberry tree before. There were loads of birds in the area, the tree was laden with berries, plus masses of berries on the ground beneath it. We didn't…
#birds #birdphotography
Our local woodpecker is -SO- excited he found this tree on our property that was damaged in a recent storm
I like to imagine him making bad kung fu movie sound effects every time he goes at it
HIIII-YAH!
The "#Mastodon #Peak #Loop" delivers
desert scrubland, summit views stretching to the Salton Sea, and mine ruins perched on a ridgeline
-- across a short 2.6-mile trail in Joshua Tree's southern region
Age is …
For, reasons, I find myself looking up serpulids on Wikipedia and look at this beauty.
The name Christmas tree worm doesn't really do it justice. Not for the first time I wonder if I should have pursued marine biology as a specialism...
https://en.wikipedia.org/wiki/Serpulidae#/media/File:Spirobranchus_giganteus_(Red_and_white_christmas_tree_worm).jpg
tree-of-life: Protein interactomes across the tree of life (2019)
Protein-protein iteraction networks ("interactome") for 1,840 species. An interactome captures all physical protein-protein interactions within one species, from direct biophysical protein-protein interactions to regulatory protein-DNA and metabolic interactions. .
This network has 749 nodes and 2751 edges.
Tags: Biological, Protein interactions
Different Corners XI ▶️
不同的角落 XI ▶️
📷 Nikon F4E
🎞️ Rollei RPX 400
#filmphotography #Photography #blackandwhite
Ed "Too Tall" Jones on Shaping the Cowboys' Identity | The Route Tree https://www.youtube.com/watch?v=mj52k_ohqfQ
Saw a crested caracara on our walk this morning. Thought at first an eagle but the black on the top of the head is wrong. Fairly large bird is stayed in the tree for a bit then flew off. First I have seen one near the coast. Usually I see then towards the center of the state. The other side of Arcadia has quite a few of them.
Tree blossoms on a Friday morn
Naming Things Is Hard
Big Tree™ (no understatement!) at Prairie Creek Redwoods State Park, 2019.
This beautiful individual is 1500 years old, but will it or its kind survive another 1500 years (or even just 150 years) of human presence?
#ThickTrunkThursday #NaturePhotography
It’s a “White Ash”, Fraxinus americana.
#Photography #thicktrunktuesday
oooof. this incumbent running for re-election to the SF Bike Coalition board is literally a landlord lawyer.
if you're a member, the voting details are here and there are 10 candidates for 8 seats. https://sfbike.org/news/meet-the-candidat…
Tony Casillas on 'Defenses Win Championships' Philosophy | The Route Tree https://www.youtube.com/watch?v=fRcNz6Q70fE
The Family Tree
A podcast for parents who want grounded conversations without the overwhelm, hosted by Jess and Bree...
Great Australian Pods Podcast Directory: https://www.greataustralianpods.com/the-family-tree/
Everson Walls Talks Going Undrafted to Super Bowl Champion | The Route Tree https://www.youtube.com/watch?v=btComhcn-GU
Billy Joe Dupree Discusses Redefining the Tight End Position | The Route Tree https://www.youtube.com/watch?v=KWN9oUHq1Ac
Different Corners IX ▶️
不同的角落 IX ▶️
📷 Nikon F4E
🎞️ Rollei RPX 400
#filmphotography #Photography #blackandwhite
Since we had temperatures of -15/-13℃ (5℉) the past few nights, I was planning to go on an early morning shoot of one of my favorite waterfalls, but decided against it due to severe black ice warnings and likely ensuing road chaos today... Hope there will be more cold nights this winter...
So instead, some close-up detail shots of ice structures at the same waterfall from exactly 364 morning ago. Enjoy!
tree-of-life: Protein interactomes across the tree of life (2019)
Protein-protein iteraction networks ("interactome") for 1,840 species. An interactome captures all physical protein-protein interactions within one species, from direct biophysical protein-protein interactions to regulatory protein-DNA and metabolic interactions. .
This network has 16439 nodes and 440135 edges.
Tags: Biological, Protein interactions
Here’s a half-block stretch in the Avenues with no trees.
Legislation by Mayor Lurie and Alan Wong made it harder to remove these driveways by allowing them to remain when garages are converted to housing.
Now the Lurie-Wong legislation to let developers not plant trees and limit tree removal appeals is going to Planning Commission tomorrow.
#sfpol
Red-tailed hawk looks down from a tree while its partner eats a squirrel that fell from a similar tree -- this population is rather famous #photo
Shapiro Lecture, Catholic Theological Union: Rewilding the Tree of Life - Jewish Law and Theology in the Time of Climate Change. https://networks.h-net.org/group/announcements/20137768/shapiro-lecture-catholic-theologica…
Different Corners X ▶️
不同的角落 X ▶️
📷 Nikon F4E
🎞️ Rollei RPX 400
#filmphotography #Photography #blackandwhite
Follie Follie II🍁
叶啊叶 II🍁
📷 Nikon FE
🎞️ Ilford FP4 Plus 125, expired 1993
If you like my work, buy me a coffee from PayPal #filmphotography
tree-of-life: Protein interactomes across the tree of life (2019)
Protein-protein iteraction networks ("interactome") for 1,840 species. An interactome captures all physical protein-protein interactions within one species, from direct biophysical protein-protein interactions to regulatory protein-DNA and metabolic interactions. .
This network has 624 nodes and 1992 edges.
Tags: Biological, Protein interactions
Knocked ✊
敲 ✊
📷 Nikon FE
🎞️ Ilford FP4 Plus 125, expired 1993
If you like my work, buy me a coffee from PayPal #filmphotography
tree-of-life: Protein interactomes across the tree of life (2019)
Protein-protein iteraction networks ("interactome") for 1,840 species. An interactome captures all physical protein-protein interactions within one species, from direct biophysical protein-protein interactions to regulatory protein-DNA and metabolic interactions. .
This network has 516 nodes and 2241 edges.
Tags: Biological, Protein interactions
Cross To The Other Side V ❎
去向另一边 V ❎
📷 Nikon FE
🎞️ Lucky C200
If you like my work, buy me a coffee from PayPal #filmphotography
Urban Texture 🧩
城市质地 🧩
📷 Nikon F4E
🎞️ ERA 100, expired 1993
#filmphotography #Photography #blackandwhite